20110603 - Marco Bink 20110823(update) - Marco Bink

This page is intended to shape the WG2 meeting on Genotyping by Sequencing

We welcome your contribution to this wiki page!

• DATE

  • November 3 & 4 2011

• VENUE

  • Hof van Wageningen conference centre, Wageningen NL

  • Local organiser: Marco Bink
• THEME

  • Genotyping by Sequencing

• CHAIRS
  • Miguel Perez Enciso
  • David Marshall
• CONFIRMED SPEAKERS

  • Dave Marshall || Micha Bayer (James Hutton Institute, UK)

  • Stephan Byrne || Torben Asp (Copenhagen, DK)

  • Hendrik Jan Megens (Wageningen, population genetics, SNP calling)
  • Simon Heath, Spanish Center for Genomic Analysis, Barcelona ES, statistical issues in NGS

  • John Davey (U of Edinburgh , john.davey@ed.ac.uk), statistical aspects of the analysis of genotyping by sequencing data. confirmed

  • Emanuele Ranieri, Center for Genomic Analysis, Barcelona ES , genotype calling
  • Nathalie van Orsouw, Keygene NL

• Tentative schedule
  • Thursday 3 November 2011:

• Friday 4 November 2011:

• SCIENTIFIC PROGRAM

  • Introduction on Genotyping by Sequencing

    • Techniques & experimental set-up (whole genome, reduced libraries, RNA, etc.)

  • Experiences
    • Denmark - Torben Asp
    • UK Scotland - David Marshall
    • The Netherlands - Gerard van der Linden
  • USA - (invite Ed Buckler or lab-member?)
  • etc. (Spain, France, ?)
  • Imputation strategies
  • Next steps
    • Identification of common ground
    • Identification of possible funding opportunities